Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_3516_4076_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3516 - 4076

Intron Length:

561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCTGC

5'SS Class:

major

3'SS Sequence:

GTCTCTTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCGCAT

U12 Branch Point Sequence:

CCAGCGGGAACA

Flanking Amino Acid:

YVLDSIRTYYGSSREKSTTT

Intron Amino Acid Position:

572

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

60.1

41.9

Major BPS

57.4

0.18

1.4

67.6

40.6

Major PPT

0.61

0.8

37.1

Minor 5ss

38.3

-1.3

41.6

45.3

Minor BPS

36.3

-1

2.5

44.12

44.5

Associated Gene:

Gene:

NBEAL2

Ensembl Gene ID:

ENSAPLG00000005038

Chromosome:

PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005293

21 - 14691

14671