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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_4794_4936_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4794 - 4936
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTGT
5'SS Class:
major
3'SS Sequence:
TCCTTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
GGGACCAAAACT
Flanking Amino Acid:
RCLSEQVLGADPPNYKDLVA
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
61.5
45.6
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
79.1
0.65
0.8
72.9
32
Minor 5ss
42.9
-0.8
3.5
65.1
46.1
Minor BPS
46.9
-0.1
2
63.58
45.7

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671