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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_8099_8201_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8099 - 8201
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCACCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
TTCACCTCACGC
Flanking Amino Acid:
VGYIMLQDPQLHSLAYVKLH
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
59
0.2
1
56.8
32.7
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
45.7
-0.3
2.1
59.11
45.9

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671