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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_814_892_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
814 - 892
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCAACCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTTCTCAACC
Flanking Amino Acid:
PEVAFNDSAWHCVDIVHVAG
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
65.7
0.35
0.9
58
32.6
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
63.8
0.41
1.6
69.77
42

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671