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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_9791_9864_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9791 - 9864
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
CCCCTCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCTTGCTGATCT
Flanking Amino Acid:
LEASALRDNLGADNLHNPAE
Intron Amino Acid Position:
1398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
73.4
0.53
0.9
64
36.7
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
48.3
-0
2.1
69.48
46.9

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671