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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_9986_10085_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9986 - 10085
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TGTCGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTGTCCTCACCC
Flanking Amino Acid:
AEEDLPVLDTQAEPKEQNQR
Intron Amino Acid Position:
1438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
68.8
0.42
0.9
58.6
38.4
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
56
0.17
1.9
67.46
43.9

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671