Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020536.1_683_916_F

Intron Information:

Intron Rank:

142561

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

683 - 916

Intron Length:

234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGCGTGGG

5'SS Class:

weak_major

3'SS Sequence:

CTCTCCTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

CTCTCCTGCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.4

0.22

1.1

42.9

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

72.5

0.51

0.9

67.4

32.5

Minor 5ss

26.8

-2.7

3.2

26.8

37.9

Minor BPS

55.1

0.15

67.78

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026824

Chromosome:

PEDO01020536.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040899

21 - 1173

1153

ENSAPLT00000024239

21 - 1173

1153