Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020601.1_3346_3449_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3346 - 3449

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCAACCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TTATCCCAACCT

Flanking Amino Acid:

LQDVALQVTTASSPPRSPKF

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

72.5

39.9

Major BPS

0.82

0.8

24.9

Major PPT

70.1

0.45

0.9

62.3

33.2

Minor 5ss

40.2

-1.1

3.4

55.2

Minor BPS

49.3

0.03

2.2

77.53

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022508

Chromosome:

PEDO01020601.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023875

2954 - 6611

3658