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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020661.1_469_1250_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
469 - 1250
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TCTTCCCTCACA
Flanking Amino Acid:
IRGDFCVDVGRNVIHGSDSV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
81.9
0.72
0.7
76.2
26
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
59.9
0.31
2.1
75.88
41.5

Associated Gene:

Gene:
NME3
Ensembl Gene ID:
ENSAPLG00000005317
Chromosome:
PEDO01020661.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005485
106 - 1368
1263