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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020675.1_32_459_R

Intron Information:

Intron Rank:
149196
Intron Class:
major
Intron Phase:
Intron Coordinates:
32 - 459
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTACG
5'SS Class:
major
3'SS Sequence:
TTATGTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCGTTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
66.6
44.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.6
0.55
1
69
41.8
Minor 5ss
35.1
-1.7
2.9
43.8
43.5
Minor BPS
45
-0.3
1.9
58.95
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027779
Chromosome:
PEDO01020675.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034931
21 - 1548
1528