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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020687.1_1648_1719_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1648 - 1719
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGTGG
5'SS Class:
major
3'SS Sequence:
CCCCAATGCACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGGTCCCCAATG
Flanking Amino Acid:
DNAPEFDPKTYEVAVPENEA
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.3
52.6
46.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
59.3
0.21
1
52.1
35.4
Minor 5ss
42.2
-0.9
3.2
55.8
48.4
Minor BPS
48.8
-0.2
2
57.37
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020626
Chromosome:
PEDO01020687.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032123
3 - 4935
4933
ENSAPLT00000030554
891 - 4935
4045
ENSAPLT00000018962
8 - 4935
4928