Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020687.1_1837_1930_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1837 - 1930

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCG|GCACCGTGG

5'SS Class:

weak_major

3'SS Sequence:

GCGCGTGCGGGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCGCAG

U12 Branch Point Sequence:

CCCCCCGCAGCG

Flanking Amino Acid:

SGLDREVGPAYTLTVQAADL

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.8

0.14

1.4

41.6

45.2

Major BPS

38.6

-0.7

1.6

42.6

40.4

Major PPT

42.2

-0.4

1.7

38.1

39.9

Minor 5ss

30.8

-2.2

4.3

45.9

49.3

Minor BPS

36.8

-1.1

2.2

36.41

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020626

Chromosome:

PEDO01020687.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032123

3 - 4935

4933

ENSAPLT00000030554

891 - 4935

4045

ENSAPLT00000018962

8 - 4935

4928