Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020688.1_1081_1559_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1081 - 1559

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCGTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAT

U12 Branch Point Sequence:

CTCTCTGTCCCC

Flanking Amino Acid:

RHECEKQSQKLGKKVEMVLM

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

70.9

0.52

1.1

71.4

36.6

Major PPT

69.4

0.44

0.9

60.4

35.3

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

32.6

-1.3

3.7

52.59

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014622

Chromosome:

PEDO01020688.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015249

21 - 2869

2849