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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020688.1_1656_1820_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1656 - 1820
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCATCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTCTCCCCATCC
Flanking Amino Acid:
WKPAVEAYGELLSMFEENYP
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
67.6
0.4
0.8
60.8
28.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.6
-0.3
2.1
59.12
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014622
Chromosome:
PEDO01020688.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015249
21 - 2869
2849