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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020713.1_6246_8139_F

Intron Information:

Intron Rank:
135503
Intron Class:
major
Intron Phase:
Intron Coordinates:
6246 - 8139
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTGCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CAATATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.8
0.72
0.8
77.8
31
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
48.5
-0
1.7
62.6
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022912
Chromosome:
PEDO01020713.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024587
3760 - 8560
4801