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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020740.1_319_1822_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
319 - 1822
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGCTTTTCACT
Flanking Amino Acid:
AAPKAAADFFIREPTFSPAD
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
55.3
43.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
35.2
-1.7
3.1
44.6
43
Minor BPS
57.5
0.32
1.7
76.33
40.8

Associated Gene:

Gene:
MAFA
Ensembl Gene ID:
ENSAPLG00000020634
Chromosome:
PEDO01020740.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031531
21 - 3704
3684