Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020757.1_982_1421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

982 - 1421

Intron Length:

440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATAGTGA

5'SS Class:

major

3'SS Sequence:

TCTCCCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

GTTTTCTCCCCT

Flanking Amino Acid:

SGSQDSSASAGSLVQAALTQ

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.9

0.33

1.1

54.4

39.1

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

81.8

0.72

0.7

73.2

31.7

Minor 5ss

41.7

-0.9

3.2

52.5

46.6

Minor BPS

39.6

-0.7

3.6

72.31

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025436

Chromosome:

PEDO01020757.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038124

21 - 2216

2196