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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020774.1_965_2982_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
965 - 2982
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTGCCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
TCACCCCAAACC
Flanking Amino Acid:
DNKLFREEFNALPACPIQAT
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
69.3
35.8
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
73
0.52
1
65.5
41
Minor 5ss
29.9
-2.3
3.1
35.2
33.9
Minor BPS
48.4
-0.1
2
61.55
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026904
Chromosome:
PEDO01020774.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043124
866 - 3212
2347