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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020785.1_991_1082_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
991 - 1082
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGCGCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CTGGGCTCACCT
Flanking Amino Acid:
YPIFFFGTHETAFLGPKDLF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
69.7
41.3
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
40.4
-1.1
3.4
56.2
41.6
Minor BPS
42.4
-0.5
2.2
59.2
49.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030450
Chromosome:
PEDO01020785.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028068
17 - 1556
1540