About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020799.1_739_849_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
739 - 849
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TTCCCCGCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TTCCCCGCAGCA
Flanking Amino Acid:
PPGRSAAGRDAGGEKGPRKR
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
67.4
0.39
0.9
62.6
33.1
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
44.1
-0.4
2.3
61.11
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028248
Chromosome:
PEDO01020799.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029679
212 - 1175
964