Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020810.1_1374_1897_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1374 - 1897

Intron Length:

524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGGCCC

5'SS Class:

major

3'SS Sequence:

CCCCATATCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTGAT

U12 Branch Point Sequence:

TATCCCGTGATA

Flanking Amino Acid:

PEVLEAHRVIRSRLEAELSR

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

57.6

41.5

Major BPS

56.3

0.16

1.3

48.7

45.1

Major PPT

67.5

0.4

0.9

60.9

33.3

Minor 5ss

25.5

-2.8

3.2

33.6

41.9

Minor BPS

53.5

0.1

68.68

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019999

Chromosome:

PEDO01020810.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022145

21 - 2312

2292

ENSAPLT00000018966

21 - 2312

2292