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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020820.1_851_937_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
851 - 937
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAC
U12 Branch Point Sequence:
CTCACCCCGACG
Flanking Amino Acid:
RGSITRDSVYILHARCIYNA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.6
39.7
Major BPS
48.6
-0
1
54.6
31.2
Major PPT
75.9
0.58
0.7
69.2
24.6
Minor 5ss
34
-1.8
3.2
44.2
43.7
Minor BPS
43.8
-0.6
2
48.51
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014341
Chromosome:
PEDO01020820.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014936
523 - 1942
1420