Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020837.1_3479_3657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3479 - 3657

Intron Length:

179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGACA

5'SS Class:

major

3'SS Sequence:

GTTCTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAA

U12 Branch Point Sequence:

TTCAAAATAAGC

Flanking Amino Acid:

EEFGSSAARKIRRHLRQRYG

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

68.4

38.2

Major BPS

68.1

0.45

73.5

28.6

Major PPT

80.7

0.69

0.8

73.1

37.3

Minor 5ss

25.7

-2.8

3.1

31.1

42.7

Minor BPS

40.9

-0.7

2.2

54.44

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022883

Chromosome:

PEDO01020837.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034424

2080 - 4510

2431