About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020848.1_216_261_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
216 - 261
Intron Length:
46

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGGGGGCG
5'SS Class:
major
3'SS Sequence:
CGTCCTGGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACCG
Flanking Amino Acid:
EAPWWRVTAAVTISSTAEKV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
59.4
36.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
63.5
0.3
1
60.6
40.2
Minor 5ss
12.5
-4.3
3.7
16.6
32.2
Minor BPS
51.6
-0
2
59.08
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022120
Chromosome:
PEDO01020848.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026717
185 - 1511
1327