About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020850.1_1349_2007_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1349 - 2007
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
AACATAGAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAC
U12 Branch Point Sequence:
TTGGAATAAACC
Flanking Amino Acid:
QWICAKAYGIEGVPDSYLHS
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
55.8
0.15
1
63
29.3
Major PPT
44.8
-0.3
1.1
35.3
37.7
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
45.4
-0.3
2.1
60.23
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017754
Chromosome:
PEDO01020850.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047400
1221 - 2170
950