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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020857.1_401_1620_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
401 - 1620
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GGAGTTCAACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTTCAA
U12 Branch Point Sequence:
TGGAGTTCAACA
Flanking Amino Acid:
MKMAGLDAIQTPSAGSCTWG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
47
-0.1
1.2
39.5
43
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
46.4
-0.2
2
56.92
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022504
Chromosome:
PEDO01020857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020930
300 - 1744
1445