Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020861.1_497_1280_F

Intron Information:

Intron Rank:

138361

Intron Class:

major

Intron Phase:

Intron Coordinates:

497 - 1280

Intron Length:

784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

CTTTTTGTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAG

U12 Branch Point Sequence:

TTTTTGTTGAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

79.2

33.9

Major BPS

45.4

-0.2

1.8

59.3

47.1

Major PPT

76.9

0.61

1.1

78.6

33.6

Minor 5ss

40.9

-1

2.8

58.9

39.3

Minor BPS

50.4

-0.1

2.2

66.96

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024453

Chromosome:

PEDO01020861.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026483

21 - 3248

3228