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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020885.1_10313_10397_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10313 - 10397
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATGCTGTACCC
Flanking Amino Acid:
RLWAKQQGLAGNPAGGGPLL
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
79
0.72
1
69
38.9
Major PPT
65.7
0.35
0.8
61.6
27.2
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
44
-0.4
2.2
55.53
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021726
Chromosome:
PEDO01020885.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028636
8845 - 12338
3494