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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020885.1_10508_10585_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10508 - 10585
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGGGG
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGTTTTGTGACC
Flanking Amino Acid:
GLAGDISVDNRLALHNTRFL
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.3
45.5
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
30.1
-2.3
3.3
38.2
46.8
Minor BPS
52.8
0.07
2
69.34
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021726
Chromosome:
PEDO01020885.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028636
8845 - 12338
3494