About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020914.1_2134_2394_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2134 - 2394
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GGTCCCCGGAGC
Flanking Amino Acid:
LLIFGSGSEETTTLIGLLKT
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
72.5
0.51
0.8
64.8
30.7
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
41.7
-0.6
2
50.98
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028320
Chromosome:
PEDO01020914.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037867
1645 - 2977
1333