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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020922.1_1382_1828_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1382 - 1828
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
ACCCCCCCAGCT
Flanking Amino Acid:
IPFLSYLPTEVQLINDAYNA
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
42.4
-0.4
2
57.1
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021714
Chromosome:
PEDO01020922.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045730
247 - 2760
2514