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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020922.1_6709_6792_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6709 - 6792
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
TGCCGTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GGGGTCTCAGCG
Flanking Amino Acid:
VQKCPPSPCPACPEHTLQGT
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
68.3
0.41
0.9
61.4
35
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
42
-0.7
1.8
40.66
43.4

Associated Gene:

Gene:
CILP2
Ensembl Gene ID:
ENSAPLG00000029852
Chromosome:
PEDO01020922.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042741
3704 - 10152
6449