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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020935.1_669_1457_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
669 - 1457
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
TCCCGCTCACAC
Flanking Amino Acid:
VELGKRQVIPGLEQSLLDMC
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
81.7
0.71
0.7
76.6
25.3
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
38.7
-0.8
2.1
44.84
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028611
Chromosome:
PEDO01020935.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039638
355 - 1749
1395