Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020935.1_896_1279_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

896 - 1279

Intron Length:

384

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGGGCTTG

5'SS Class:

major

3'SS Sequence:

CGTGTGGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTGAC

U12 Branch Point Sequence:

CCCCCGGTGACC

Flanking Amino Acid:

HRDGHRERCGGSLEDGRIID

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.1

56.7

Major BPS

47.5

-0.1

1.3

38.2

41.7

Major PPT

61.5

0.26

53.5

41.5

Minor 5ss

40.2

-1.1

3.3

46.2

49.1

Minor BPS

39.4

-0.8

2.5

46.29

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028611

Chromosome:

PEDO01020935.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017230

355 - 1749

1395