Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020947.1_387_473_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

387 - 473

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGGGTGCC

5'SS Class:

major

3'SS Sequence:

CCTGCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCAAT

U12 Branch Point Sequence:

CCCCCCTGCCCC

Flanking Amino Acid:

SGRMTHHHPTGYLGALAVAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

62.1

38.4

Major BPS

48.8

-0

1.3

56.3

37.4

Major PPT

68.8

0.42

0.8

61.6

Minor 5ss

27.6

-2.6

3.3

35.7

41.2

Minor BPS

32.3

-1.3

3.4

43.78

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028108

Chromosome:

PEDO01020947.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038785

24 - 2132

2109