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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020947.1_658_1281_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
658 - 1281
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCCCCACTGACC
Flanking Amino Acid:
AWPFFGDAWRRYLESRGLLE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
46.2
-0.3
1.9
57.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028108
Chromosome:
PEDO01020947.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038785
24 - 2132
2109