Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020966.1_10542_10710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10542 - 10710

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGCGTGCG

5'SS Class:

major

3'SS Sequence:

CTTTCCGAGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAC

U12 Branch Point Sequence:

TCACCGCTGACA

Flanking Amino Acid:

VFGVKISVVTKRERSKVPYI

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

59.7

39.5

Major BPS

61.7

0.29

63.7

32.3

Major PPT

64.7

0.33

1.1

58.3

42.2

Minor 5ss

28.2

-2.5

3.2

32.1

36.2

Minor BPS

44.4

-0.4

2.3

57.55

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024397

Chromosome:

PEDO01020966.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024102

6560 - 10858

4299