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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021006.1_274_538_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
274 - 538
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
TGTGCCCCAATC
Flanking Amino Acid:
IEEFLESCQKDENIMRSMQL
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
48.8
-0.1
2
64.28
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025421
Chromosome:
PEDO01021006.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040226
21 - 1559
1539