Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021007.1_1610_1703_R

Intron Information:

Intron Rank:

146639

Intron Class:

major

Intron Phase:

Intron Coordinates:

1610 - 1703

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

CGCCCCGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

AGGCACTGACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.9

29.7

Major BPS

61.3

0.28

52.7

34.2

Major PPT

65.3

0.34

0.9

57.2

33.3

Minor 5ss

25.3

-2.8

3.1

30.4

42.9

Minor BPS

43.2

-0.5

1.8

49.39

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026217

Chromosome:

PEDO01021007.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024962

631 - 2037

1407