Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021024.1_1440_1961_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1440 - 1961

Intron Length:

522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGGGTCCG

5'SS Class:

major

3'SS Sequence:

AGCATTCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTACAA

U12 Branch Point Sequence:

AGCACTACAAGA

Flanking Amino Acid:

KTKDNIVEITGCRPPRGAQV

Intron Amino Acid Position:

327

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

53.6

45.1

Major BPS

52.2

0.06

34.9

Major PPT

73.2

0.52

0.9

65.8

40.2

Minor 5ss

28.2

-2.5

33.5

41.6

Minor BPS

39.5

-0.8

1.9

44.41

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018690

Chromosome:

PEDO01021024.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021377

21 - 2950

2930