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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021024.1_1464_2936_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1464 - 2936
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTCTTTC
5'SS Class:
weak_major
3'SS Sequence:
CCCCACCACCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CACCCCTCATCC
Flanking Amino Acid:
STPPPRGPTG
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
67
39.3
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
59.8
0.22
0.9
49.9
32.7
Minor 5ss
59.7
0.33
1.9
71
39.3
Minor BPS
46.9
-0.2
1.8
53.29
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020014
Chromosome:
PEDO01021024.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035663
860 - 2938
2079