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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021036.1_272_556_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
272 - 556
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTGTCCTCACCC
Flanking Amino Acid:
FTMFAEGFLLKKKFSWGIQM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
87.9
0.85
0.7
80.1
31.9
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
56
0.17
1.9
67.46
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027636
Chromosome:
PEDO01021036.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037449
137 - 1755
1619