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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021036.1_626_841_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
626 - 841
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAC
U12 Branch Point Sequence:
AAACCCCCAACT
Flanking Amino Acid:
AMIIGAFVAASADLAFDLEG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
54.8
0.12
1.1
61.2
32.7
Major PPT
83.2
0.75
0.7
79.1
26.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
49.1
0.01
1.9
68.14
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027636
Chromosome:
PEDO01021036.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037449
137 - 1755
1619