Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021057.1_4906_5427_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4906 - 5427

Intron Length:

522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTCGA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAATAT

U12 Branch Point Sequence:

TGCCCCACGAGT

Flanking Amino Acid:

GLGRKALTAQEKEYVRQGKE

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

1.1

68.9

43.8

Major BPS

50.9

0.02

1.1

47.4

35.7

Major PPT

76.2

0.59

0.7

31.5

Minor 5ss

39.1

-1.2

2.9

50.8

45.5

Minor BPS

42.3

-0.5

59.04

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009759

Chromosome:

PEDO01021057.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010207

1558 - 8229

6672