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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021057.1_6215_7327_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6215 - 7327
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAG
U12 Branch Point Sequence:
TGTGTGAGACCC
Flanking Amino Acid:
VLTQEAEEERWYLAAQAAAA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
45.9
-0.2
1.7
42.8
49.4
Major PPT
73.8
0.54
0.8
65
36.4
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
35.1
-1.1
2.3
48.11
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009759
Chromosome:
PEDO01021057.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010207
1558 - 8229
6672