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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021057.1_7607_7696_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7607 - 7696
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGATTTTATTT
Flanking Amino Acid:
VRLRHWWVIAVTTLVSSAFL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.8
44.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
33.4
-1.9
2.9
41.5
44.6
Minor BPS
49.6
0.05
1.6
64.37
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009759
Chromosome:
PEDO01021057.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010207
1558 - 8229
6672