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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021072.1_2217_3391_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2217 - 3391
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTCT
5'SS Class:
major
3'SS Sequence:
CTCTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TGAAACCCAATT
Flanking Amino Acid:
FLLLSCLGAAVAFPRAADDD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.8
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
84.7
0.78
0.7
83.9
24.2
Minor 5ss
41.9
-0.9
3
56.3
43.2
Minor BPS
43.6
-0.4
2
61.25
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028051
Chromosome:
PEDO01021072.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025724
234 - 3434
3201