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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021072.1_384_783_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
384 - 783
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCCTCTAAATT
Flanking Amino Acid:
FLEGGKDSCQGDSGGPVVCN
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
54.5
0.22
1.7
69.3
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028051
Chromosome:
PEDO01021072.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025724
234 - 3434
3201