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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021080.1_1649_1966_F

Intron Information:

Intron Rank:
127115
Intron Class:
major
Intron Phase:
Intron Coordinates:
1649 - 1966
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGTTT
5'SS Class:
major
3'SS Sequence:
TTATTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGCCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.6
36.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.1
0.7
0.8
73.9
36.6
Minor 5ss
36.8
-1.5
3.5
47.1
48.3
Minor BPS
54.7
0.23
2.1
79.83
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018525
Chromosome:
PEDO01021080.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041421
1170 - 1986
817