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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021080.1_1649_2390_F

Intron Information:

Intron Rank:
127116
Intron Class:
major
Intron Phase:
Intron Coordinates:
1649 - 2390
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGTTT
5'SS Class:
major
3'SS Sequence:
TTACCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.6
36.7
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
80
0.67
0.8
73.7
31
Minor 5ss
36.8
-1.5
3.5
47.1
48.3
Minor BPS
60.4
0.31
1.7
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018525
Chromosome:
PEDO01021080.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047616
1170 - 3252
2083